PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_22709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family E2F/DP
Protein Properties Length: 298aa    MW: 33436.7 Da    PI: 7.6393
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_22709genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.68.8e-2838120271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  PEQU_22709  38 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 120
                 689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.1E-1227295IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.8E-4733125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.1E-3637120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.3E-2539120IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.76E-2240121IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.68E-42125228IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440749.42E-42126231No hitNo description
SMARTSM011382.0E-69127293IPR014889Transcription factor DP, C-terminal
PfamPF087819.6E-41128235IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLFNATSSAQ VLVCNETYTI NSAKKKKRGA RAVAGDKSGR GLRQFSMKVC EKVESKGRTT  60
YNEVADELVA EFADPNNNLA SPDQQQYDEK NIRRRVYDAL NVLMAMDIIS KDKKEIQWKG  120
LPRTSLNDIE ELKAERASLK RRIEKKTVYL QELEDQIIGL QNLIQRNEQL HGSGNAPSGG  180
VALPFILVQT RPHATVEVEI SEDMQLVHFD FNSTPFELHD DTYVLKAMRF CEREQQDGGG  240
GGTHEPTLNG GECSSNQGVH QTQQPPLLQW PSPRSKLPAS PPIPGILKAR VKHEHHNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-4131125193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008775137.11e-162PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-133DPB_ARATH; Transcription factor-like protein DPB
TrEMBLW9QN121e-157W9QN12_9R
STRINGGSMUA_Achr1P00430_0011e-152(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-128Transcription factor DP